CHARACTERIZATION AND SELECTION OF NATIVE RHIZOBIA FROM AMAZONIAN SOILS FOR Vigna unguiculata (L.) WALP.

Authors

DOI:

https://doi.org/10.32404/rean.v13i1.9495

Keywords:

Cowpea, Biological nitrogen fixation, Bradyrhizobium, Rhizobium, Amazon

Abstract

Cowpea (Vigna unguiculata) is a legume of great socioeconomic importance in Brazil, particularly in the North and Northeast regions, where it accounts for about 30% of the country’s total bean production. It plays a critical role in food security and income generation for smallholder farmers, especially in challenging environments such as the Amazon. However, cowpea yield remains limited due to low technology adoption and poor management practices. Biological nitrogen fixation (BNF), mediated by symbiotic bacteria such as Bradyrhizobium and Rhizobium, offers a sustainable alternative to chemical fertilizers. This study aimed to isolate and characterize rhizobia from distinct Amazonian soils (Floodplain, Amazonian dark earth, and Oxisol). The isolates were evaluated in greenhouse conditions for cowpea growth promotion and characterized by 16S rRNA gene sequencing. Shoot dry mass (SDM) ranged from 736.67 to 2,220 mg per plant, and shoot dry mass nitrogen (SDMN) from 17.09 to 66.85 mg per plant. Most isolates promoted nodulation, with Rhizobium predominating, and several isolates showed similar agronomic performance, not statistically different from the recommended strain SEMIA 6462. The results indicate the potential of these native isolates for use as bioinoculants adapted to Amazonian conditions. These findings highlight the potential of native rhizobia as candidates for the development of bioinoculants adapted to Amazonian conditions.

Author Biographies

  • Cláudia Majolo, Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

    Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

  • Jéssica Pinheiro dos Santos, Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

    Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

  • Rogério Perin, Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

    Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

  • Natasha Helena Souza Ribeiro, Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

    Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

  • July Anne Amaral de Abreu, Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

    Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

  • Samára Ferreira Santos, Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

    Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

  • Elen Lira da Silva, Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

    Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

  • Vanessa Ribeiro Reis, Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

    Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

  • Marco Antônio Nogueira, Embrapa Soja, Londrina, Paraná, Brasil

    Embrapa Soja, Londrina, Paraná, Brasil

  • Aleksander Westphal Muniz, Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

    Embrapa Amazônia Ocidental, Manaus, Amazonas, Brasil

References

(I) Almeida Neta, M.N., Pegoraro, R.F., Sampaio, R.A., Costa, C.A., Fernandes, L.A., Ferreira, J.M. 2020. Does inoculation with Rhizobium tropici and nitrogen fertilization increase chickpea production?. Ciência e Agrotecnologia, 44, e01652. DOI: https://doi.org/10.1590/1413-7054202044016520

(II) Athul, P.P., Patra, R.K., Sethi, D., Panda, N., Mukhi, S.K., Padhan, K., Sahoo, S.K., Sahoo, T.R., Mangaraj, S., Pradhan, S. R., Pattanayak, S. K. 2022. Efficient native strains of rhizobia improved nodulation and productivity of French bean (Phaseolus vulgaris L.) under rainfed condition. Frontiers in Plant Science. 13, 1048696, DOI: https://doi.org/10.3389/fpls.2022.1048696

(III) Barros, V.D.C., Lira Junior, M.A., Santos, M.V.F., Costa, A.L., Arruda, A.M., Sousa, C.A. 2019. Biodiversidade rizobiana em função de solo e clima no semiárido pernambucano. Pesquisa Agropecuária Pernambucana, 24(1), e-1951242019. DOI: https://doi.org/10.12661/pap.2019.002

(IV) Bertini, C.H.C.M., Teófilo, E.M., Dias, F.T.C. 2008. Divergência genética entre acessos de feijão caupi do banco de germoplasma da UFC. Revista Ciência Agronômica, 40(01), 99-105. ISSN: 1806-6690

(V) Brown, M.B., Forsythe, A.B. 1974. Robust Tests for the equality of variances. Journal of the American Statistical Association, 69, 364-367. DOI: https://doi.org/10.1080/01621459.1974.10482955

(VI) Chagas Junior, A.F., Oliveira, L.A., Oliveira, A.N. 2010. Caracterização fenotípica de rizóbio nativos isolados de solos da Amazônia e eficiência simbiótica em feijão caupi. Acta Scientiarum Agronomy, 32(1), 161–169. DOI: https://doi.org/10.4025/actasciagron.v32i1.900

(VII) Compant, S., Clément, C., Sessitsch, A. 2010. Plant growth-promoting bacteria in the rhizo- and endosphere of plants. Soil Biology and Biochemistry, 42, 669–678. DOI: https://doi.org/10.1016/j.soilbio.2009.11.024

(VIII) CONAB. COMPANHIA NACIONAL DE ABASTECIMENTO. 2024. Ministério da Agricultura, Pecuária e Abastecimento. Acompanhamento da safra brasileira: Grãos. https://www.conab.gov.br (Accessed on May 15, 2024).

(IX) Costa, E.M., Nóbrega, R.S.A., Carvalho, F., Trochmann, A., Ferreira, L.V.M., Moreira, F.M.S. 2013. Promoção do crescimento vegetal e diversidade genética de bactérias isoladas de nódulos de feijão-caupi. Pesquisa Agropecuária Brasileira, 48(9), 1275–1284. DOI: https://doi.org/10.1590/S0100-204X2013000900012

(X) Dilworth, M.J., James, E.K., Sprent, J.I., Newton, W.E. 2008. Nitrogen-fixing Leguminous Symbioses, Springer Science, A.A. Dordrecht, The Netherlands. DOI: https://doi.org/10.1017/S0014479708007370

(XI) Fernandes, M.F., Fernandes, R.P.M., Hungria, M. 2003. Seleção de rizóbios nativos para guandu, caupi e feijão-de-porco nos tabuleiros costeiros de Sergipe. Pesquisa Agropecuária Brasileira, 38(7), 835–842. DOI: https://doi.org/10.1590/S0100-204X2003000700007

(XII) Filgueiras, G.C., Santos, M.A.S., Homma, A.K.O., Rebello, F.K., Cravo, M.S. 2009. Aspectos socioeconômicos. In: Zilli, J.É., Vilarinho, A.A., Alves, J.M.A (Ed.) A cultura do feijão-caupi na Amazônia brasileira. Embrapa Roraima, Boa vista, p. 23-58. ISBN: 978-85-62701-00-9

(XIII) Hungria, M., Araújo, R.S. 1994. Manual de métodos empregados em estudos de microbiologia agrícola. EMBRAPA-CNPAF, Documentos 46, Brasília. ISSN: 0101-9716

(XIV) Hungria, M., Campo, R.J., Mendes, I.C. 2007. A importância do processo de fixação biológica do nitrogênio para a cultura da soja: Componente essencial para a competitividade do produto brasileiro. Embrapa Soja, Londrina. ISSN: 1516-781X; n.283

(XV) Jaramillo, P.M.D., Guimarães, A.Z., Florentino, L.A., Silva, K.B., Nóbrega, R.S.A., Moreira, F.M.S. 2013. Symbiotic nitrogen‑fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon. Scientia Agricola, 70 (6), 397‑404. DOI: https://doi.org/10.1590/S0103-90162013000600004

(XVI) Joglekar, P., Mesa, C.P., Richards, V.A., Polson, S.W., Wommack, K.E., Fuhrmann, J.J. 2020. Polyphasic analysis reveals correlation between phenotypic and genotypic analysis in soybean bradyrhizobia (Bradyrhizobium spp.). Systematic and Applied Microbiology, 43(3), 126073. DOI: https://doi.org/10.1016/j.syapm.2020.126073

(XVII) Junk, W.J., Piedade, M.T.F, Wittmann, F., Schöngart, J. 2020. Várzeas Amazônicas: Desafios para um manejo sustentável. Editora INPA, Manaus. ISBN: 978-65-5633-005-1

(XVIII) Kan, F.L., Chen, Z.Y., Wang, E.T., Tian, C.F., Sui, X.H., Chen, W.X. 2007. Characterization of symbiotic and endophytic bacteria isolated from root nodules of herbaceous legumes grown in Qinghai–Tibet plateau and in other zones of China. Archives of Microbiology, 188 (2), 103–115. DOI: https://doi.org/10.1007/s00203-007-0211-3

(XIX) Li, J.H., Wang, E.T., Chen, W.F., Chen, W.X. 2008. Genetic diversity and potential for promotion of plant growth detected in nodule endophytic bacteria of soybean grown in Heilongjiang province of China. Soil Biology and Biochemistry, 40, 238–246. DOI: https://doi.org/10.1016/j.soilbio.2007.08.014

(XX) Lugtenberg, B., Kamilova, F. 2009. Plant-growth-promoting rhizobacteria. Annual Review of Microbiology, 63, 541–556. DOI: https://doi.org/10.1146/annurev.micro.62.081307.162918

(XXI) Marra, L.M., Soares, C.R.F.S., Oliveira, S.M., Ferreira, P.A.A., Soares, B.L., Carvalho, R.F., Lima, J.M., Moreira, F.M.S. 2012. Biological nitrogen fixation and phosphate solubilization by bacteria isolated from tropical soils. Plant and Soil, 357, 289‑307. DOI: https://doi.org/10.1007/s11104-012-1157-z

(XXII) Masson-Boivin, C., Giraud, E., Perret, X., Batut, J. 2009. Establishing nitrogen-fixing symbiosis with legumes. Trends in Microbiology, 17, 458–466. DOI: https://doi.org/10.1016/j.tim.2009.07.004

(XXIII) Melo, S.R., Zilli, J.É. 2009. Fixação biológica de nitrogênio em cultivares de feijão-caupi recomendadas para o Estado de Roraima. Pesquisa Agropecuária Brasileira, 44 (9), 1177–1183. DOI: https://doi.org/10.1590/S0100-204X2009000900016

(XXIV) Messias, M., Asobia, P.C., Ferreira, E.P.B. 2023. Rhizobia and azospirilla co-inoculation boosts growth and productivity of common bean. International Journal of Agriculture and Biology, 29(1), 65-73. DOI: https://doi.org/10.17957/IJAB/15.2004

(XXV) Moreira, F.M.S.; Siqueira, J.O. 2006. Microbiologia e bioquímica do solo, segunda edição, UFLA, Lavras. ISBN: 85-87692-33-X

(XXVI) Muniz, A.W.; Majolo, C. 2024. Supplemental of Characterization and selection of native rhizobia from Amazonian soils for Vigna unguiculata (L.) Walp. OSF. December 5. DOI: https://doi.org/10.17605/OSF.IO/GXNFS

(XXVII) Nyaga, J.W., Njeru, E.M. 2020. Potential of native rhizobia to improve cowpea growth and production in semiarid regions of Kenya. Frontiers in Agronomy, 214. DOI: https://doi.org/10.3389/fagro.2020.606293

(XXVIII) Norris D.O., Date, R.A. 1976. Legume Bacteriology. In: Shaw, N.H., Bryan, W.W. (Eds) Tropical pasture research-principles and methods (Commonwealth Bureau Pastures and Field Crops Bulletin), CABI Publishing, Wallingford, 51, p.134-174. ISBN: 978-0851983585

(XXIX) Oliveira, I.J., Fontes, J.R.A., Dias, M.C., Barreto, J.F. 2019. Recomendações técnicas para o cultivo de feijão-caupi no Estado do Amazonas. Circular Técnica, Embrapa Amazônia Ocidental. https://ainfo.cnptia.embrapa.br/digital/bitstream/item/208255/1/Circ-Tec-71.pdf (Accessed on September 7, 2024)

(XXX) Patten, C.L., Glick, B.R. 2002. Role of Pseudomonas putida indoleacetic acid in development of the host plant root system. Applied and Environmental Microbiology, 68(8), 3795–3801. DOI: https://doi.org/10.1128/AEM.68.8.3795-3801.2002

(XXXI) Peix, A., Ramírez-Bahena, M.H., Velázquez, E. 2015. Bacterial associations with legumes. Critical Reviews in Plant Sciences, 34, 17–42. DOI: https://doi.org/10.1080/07352689.2014.897899

(XXXII) Rodríguez, H., Fraga, R. 1999. Phosphate solubilizing bacteria and their role in plant growth promotion. Biotechnology Advances, 17, 319–339. DOI: https://doi.org/10.1016/S0734-9750(99)00014-2

(XXXIII) Schellekens, J., Almeida-Santos, T., Macedo, R.S., Buurman, P., Kuyper, T.W., Vidal-Torrado, P. 2017. Molecular composition of several soil organic matter fractions from anthropogenic black soils (Terra Preta de Índio) in Amazonia — A pyrolysis-GC/MS study. Geoderma, 288, 154-165. DOI: https://doi.org/10.1016/j.geoderma.2016.11.001

(XXXIV) Scott, A.J.; Knott, M. 1974. A Cluster Analysis Method for Grouping Means in the Analysis of Variance. Biometrics, 30(3), 507-512. DOI: https://doi.org/10.2307/2529204

(XXXV) Sharma, S.B., Sayyed, R.Z., Trivedi, M.H., Gobi, T.A., 2013. Phosphate solubilizing microbes: sustainable approach for managing phosphorus deficiency in agricultural soils. SpringerPlus, 2, 587. DOI: https://doi.org/10.1186/2193-1801-2-587

(XXXVI) Shapiro, S.S.; Wilk, M.B. 1965. An Analysis of variance test for normality (Complete Samples). Biometrika, 52(3/4), 591-611. DOI: https://doi.org/10.2307/2333709

(XXXVII) Shiraishi, A.; Matsushita, N.; Hougetsu, T. 2010. Nodulation in black locust by the Gammaproteobacteria Pseudomonas sp. and the Betaproteobacteria Burkholderia sp. Systematic and Applied Microbiology, 33, 269‑274. DOI: https://doi.org/10.1016/j.syapm.2010.04.005

(XXXVIII) Shevkani, K.; Shivani, B.; Dhaka, S.S.; Patil, C. 2025. Cowpeas for sustainable agriculture and nutrition security: an overview of their nutritional quality and agroeconomic advantages. Discov Food, 5, 109. DOI: https://doi.org/10.1007/s44187-025-00382-x

(XXXIX) Silva, E.F.L., Araújo, A.S.F., Santos, V.B., Nunes, L.A.P.L., Carneiro, R.F.V. 2010. Fixação biológica do N2 em feijão-caupi sob diferentes doses e fontes de fósforo solúvel. Bioscience Journal, 26(3), 394-402. https://seer.ufu.br/index.php/biosciencejournal/article/view/7117

(XL) Souza, R., Ambrosini, A., Passaglia, L.M.P. 2015. Plant growth-promoting bacteria as inoculants in agricultural soils. Genetics and Molecular Biology, 38, 401–419. DOI: https://doi.org/10.1590/S1415-475738420150053

(XLI) Spaepen, S., Vanderleyden, J., Remans, R. 2007. Indole-3-acetic acid in microbial and microorganism-plant signaling. FEMS Microbiology Reviews, 31(4), 425–448. DOI: https://doi.org/10.1111/j.1574-6976.2007.00072.x

(XLII) Vincent, J.M. 1970. Manual for the practical study of root nodule bacteria. Blackwell Scientific Publications, (IBP Handbook, 15), Oxford. DOI: https://doi.org/10.1002/jobm.19720120524

(XLIII) Zahran, H.H. 1999. Rhizobium-legume symbiosis and nitrogen fixation under severe conditions and in an arid climate. Microbiology and Molecular Biology Reviews, 63(4), 968–989. DOI: https://doi.org/10.1128/mmbr.63.4.968-989.1999

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Published

2026-06-16

How to Cite

CHARACTERIZATION AND SELECTION OF NATIVE RHIZOBIA FROM AMAZONIAN SOILS FOR Vigna unguiculata (L.) WALP. (2026). REVISTA DE AGRICULTURA NEOTROPICAL, 13(1). https://doi.org/10.32404/rean.v13i1.9495